miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|238227114|gb|GR095141.1|GR095141 GTAGCGCCTAAAGATGAAGATGATTATGATTAGAGAAAGGAAAATATCTTTAGAAGATAAACTAGTAGAGTACATAAACA
ACAATCCCATCACAGCAGCAGACTAATTTTTCATTTCTTTTTTTCCTACTCCAGAAAATACCCCATTACAAAAAGAAAAA
AAAAAGATATACCATTAAACAAAAGGAAGGGAAACTATTTATCATCATAAAAGGGTAAACATAGTTGCGAGGGGATGGAT
TACATAATTTCATAAGCTTCCATTTTTCATCTTCACTCGTCGTCGTCGTCATCATCATCATCGGCGCTGCCGTCCTCGTC
ATCATCGTCGTCTTCGTCATCGTTCACTTCCGACCTTGACTTGTCGGACTCCTCTTCTGTGGGCCCATCGCTCAATTTTT
TGTTGTAAGCCTGAAGGGTTTTTTCATACTCGCCCTTTCGCTTCTCAGCCTTGGCTATGTAAGGAGCTTTTTCAGCTTCT
GTGAGAGATTTCCACTTGTCACCACCAGCTTTCCCAACAGCGGCGACTGATTTGTTGTTTGGGTGCTTCTCTTTGTACGT
TTTCCTGAAGTCCTCCATGAAGACGAAGAAGGCACTAGCAGGCCTCTTGGCTTGTTTGGGTCCTTAACCGGCTTTCCCTT
CT




Most similar to sp|P40619|HMGL_IPONI

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|P40619|HMGL_IPONI HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1
          Length = 144

 Score =  154 bits (389), Expect = 5e-37
 Identities = 79/99 (79%), Positives = 83/99 (83%), Gaps = 1/99 (1%)
 Frame = -2

Query: 635 KAG*GPKQAKRPASAFFVFMEDFRKTYKEKHPNNKSVAAVGKAGGDKWKSLTEAEKAPYI 456
           KA   P + KRP SAFFVFMEDFRKTYKEKHPNNKSVA VGKAGGDKWK LT AEKAP+I
Sbjct: 28  KAVKDPNKPKRPPSAFFVFMEDFRKTYKEKHPNNKSVAVVGKAGGDKWKQLTAAEKAPFI 87

Query: 455 AKAEKRKGEYEKTLQAYNKKLSDGPT-EEESDKSRSEVN 342
           +KAEKRK EYEK LQAYNKK + G   EEESDKSRSEVN
Sbjct: 88  SKAEKRKQEYEKNLQAYNKKQAAGAAEEEESDKSRSEVN 126